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Quantify Heatmap

Quantify the area of a binary heatmap to analyze the animal percentage traveled area. It counts the black pixels from a given binary image.

Results Table Output

Exporting data from imageJ's result tables to the default CSV option can led to problems related to decimal case separators. If you found this error, we recommend the usage of Excel Functions, a plugin that allows trouble-free data exports to xlsx format.

Interface

Interface image

Input Binary Heatmap Image

The binary heatmap image to be processed. Ideally, generated with Binary Heatmap Image.

Image Input

This plugin also accepts the current open image as input. In that case, leave this field blank and ensure you have the image opened in Fiji before running the plugin.

Display plots

  • Bar Chart: Simple chart to represent area percentage. Bar Chart image

Create sequential ROIs

Opens the Create sequential ROIs plugin window.